SANTA - Spatial ANalysis of NeTwork Associations

SANTA is a computational approach for linking networks of molecular interactions to cellular functions and phenotypes. SANTA functionally annotates networks like standard enrichment methods annotate lists of genes.

SANTA is a rigorous implementation of an intuitive measure of functional association:

Several applications show that SANTA accurately quantifies the functional content of networks, points to mechanisms underlying observed phenotypes, and provides a natural way to compare functional changes across networks.

Download and Installation

To install this package directly in R type:




You can download SANTA from Bioconductor


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Other packages

  • BaalChIP - allele-specific TF binding
  • BitPhylogeny - infer intra-tumor phylogenies
  • CRImage - tumor image analysis
  • DANCE - subtype specific drivers of cancer
  • GoIFISH - single cell IFISH analysis
  • HTSanalyzeR - functional annotation
  • lol - lots of lassos
  • MEDICC - intra-patient copy number comparison
  • nem - nested effects models
  • OncoNEM - oncogenetic NEMs
  • PAN - posterior associa- tion networks
  • RedeR - graph visualiza- tion and analysis
  • RTN - network recon- struction and analysis
  • SANTA - spatial analysis of network associations
  • VULCAN - co-factors from CHiP-seq data
Data @ Bioconductor